Hamza Yusuf says, in A Time For Introspection:

Conspiracy or not, we [Muslims] are to blame for the terrible backlash against Muslims. The simple reason is that when a crazy Christian does something terrible, everyone in the West knows it is the actions of a madman because they have some knowledge of the core beliefs and ethics of Christianity. When a mad Muslim does something evil or foolish they assume it is from the religion of Islam, not because they hate us but because they have never been told by a Muslim what the teachings of Islam are all about.

As we said on our Who We Are page on this website, 

Our mandate is to provide generally reliable Islamic information to Muslims and non-Muslims alike in as educated, intellectual,  philosophical and esoteric manner as possible. In conformity with the tenets of Islam, we wish to promote tolerance and harmony both among Muslims and non-Muslims. To that end, this website has a great deal of information to provide its readers. Our main thrust is from the Sunni-Hanafi perspective [who comprise 80% of the Muslim population throughout the world], although we do try occasionally to provide information from other schools of thought for informative and comparative purposes.

One of the articles we link you to is by Nuh Ha Mim Keller. In that article he says:

 . . . there will always be publicists who hate Muslims, and who for ideological or religious reasons want others to do so. Where there is an ill-will, there is a way. A fifth of humanity are Muslims, and if to err is human, we may reasonably expect Muslims to err also, and it is certainly possible to stir up hatred by publicizing bad examples. But if experience is any indication, the only people convinced by media pieces about the inherent fanaticism of Muslims will be those who don’t know any. Muslims have nothing to be ashamed of, and nothing to hide, and should simply tell people what their scholars and religious leaders have always said: first, that the Wahhabi sect has nothing to do with orthodox Islam, for its lack of tolerance is a perversion of traditional values; and second, that killing civilians is wrong and immoral.